I have Escherichia Coli, Is there a way I can pass this to my baby?

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I am 12 weeks pregnant and I have Escherichia Coli in the urine. The doctor gave me antibiotics. I do not know what is more damaging the antibiotics or the bacteria, however I take the antibiotics anyway. Can you please tell me if someone has had bacteria in the urine? I am very scared because they are going to take a swab from the vagina and I am afraid from the result.